PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G193600.1
Common NameB456_011G193600, LOC105777318
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 256aa    MW: 28812.4 Da    PI: 7.5021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G193600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2090138355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp     +  r++lg++ taeeAa+a+++a+k+++g
  Gorai.011G193600.1  90 YRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTYNTAEEAARAYDEAAKRIRG 138
                         9*******.**********72....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.97389146IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-2389147IPR016177DNA-binding domain
CDDcd000181.10E-3389148No hitNo description
Gene3DG3DSA:3.30.730.107.4E-3389147IPR001471AP2/ERF domain
SMARTSM003801.2E-3789152IPR001471AP2/ERF domain
PfamPF008471.1E-1490138IPR001471AP2/ERF domain
PRINTSPR003671.3E-1190101IPR001471AP2/ERF domain
PRINTSPR003671.3E-11112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MCGGAIISDF IAVKRGRKLT AEDLWSELDT FSDLLGLDYG NGKDPFSQFD NTKAGSKAKN  60
LEKVTNESTQ KTSRGREKEG KTQRTRKNIY RGIRQRPWGK WAAEIRDPHK GVRVWLGTYN  120
TAEEAARAYD EAAKRIRGDK AKLNFPQTPR LTQPPAKKRC MMAPELTPPS SETKSSPTPQ  180
PFMGFGYENG VYRPSEAMES EMELKEQISS LESFLGLEPD EMTTELSGSA EPESVNLWML  240
DDLVTHHQQQ PQLFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-2290146663ATERF1
2gcc_A2e-2290146663ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gra.3020.0seedling
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7793380.0AY779338.1 Gossypium hirsutum AP2/EREBP transcription factor ERF-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012455978.10.0PREDICTED: ethylene-responsive transcription factor RAP2-3
SwissprotP427364e-63RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLA0A0D2UVB30.0A0A0D2UVB3_G
STRINGVIT_05s0077g01860.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-53ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]